Commit 94c4048b authored by adrien's avatar adrien
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parent 36c8902d
......@@ -14,11 +14,12 @@ Any part of the sequence name following a blank space will be removed
## FastqSeq : Simple object representing a Fastq sequence
FastqSeq is a simple python object class generating a object representing a Fastq sequence. The object is initialized with:
* A for the sequence without @
* A name for the sequence without @
* A DNA sequence as a string
* A quality score, as an **illumina 1.8+** encoded quality string, a numpy.ndarray of integers in **Phred +33** or python list of integers in **Phred +33**
* Eventually a short text description
The DNA sequence and the quality score must have the same size otherwise an assertion error is raised
After creation the object has the following fields:
* name = name of the sequence without @.
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