... | ... | @@ -246,8 +246,6 @@ The third part of the name defines the informations to be fount: |
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┃ ┃ ┣ 📜samplesToKeep.txt
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┃ ┃ ┣ 📜samplesToRemove.txt
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┃ ┃ ┗ 📜sampletable.tsv
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┃ ┣ 📂REPORT # necessary files for report (js, css, etc...)
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┃ ┗ 📜report.html #### MAIN REPORT FOR PROJECT ####
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```
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In the **DE** (stands for **D**ifferential **E**xpression) folder, you will find the results of the comparisons between conditions.
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- "gseGo.txt", "gseKegg.txt" : Gene Set Enrichment Analysis (GSEA) results for Gene Ontology and Kegg Pathways. You can find all about GSEA analysis on the [Broad Institut GSEA page](https://www.gsea-msigdb.org/gsea/index.jsp).
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- "stringFunctionalEnrichment.tsv" : ORA analysis from the [STRING-DB](https://string-db.org/) database.
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![Tertiary Analysis](../images/terAnalysis.png) |
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![Tertiary Analysis](../images/terAnalysis.png)
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## The final report
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```sh
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📦RESULTS # main output folder
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┣ 📂TestProject
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┃ ┣ 📂REPORT # necessary files for report (js, css, etc...)
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┃ ┗ 📜report.html #### MAIN REPORT FOR PROJECT ####
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```
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At the root of the project folder, you will find a file named "report.html" and a folder named **REPORT**. The folder contains all javascript, images, stylesheet etc... to make the report look good. You can open the "report.html" file with your favorite browser. It gives all results generated by the pipeline into a user friendly and interactive report.
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<iframe
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src="../images/report.html"
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style="width:100%; height:500px;"
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>
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</iframe> |
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