... | ... | @@ -25,9 +25,9 @@ For example, if the directory structure looks like: |
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```sh
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📦MYPROJECT # main output folder specified with '-w' argument
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┣ 📂NTS-XXX # project folder (column 4 in samplesheet)
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┃ ┣ 📂FASTQ # temporary folder for fastq files
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┃ ┣ 📂FASTQ # folder for fastq files
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┃ ┣ 📂FASTQC # FastQC results
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┃ ┣ 📂CUTADAPT # fastq files after cutadapt
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┃ ┣ 📂CUTADAPT # temporary fastq files after cutadapt
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┃ ┣ 📂MULTIQC # multiQC results
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┃ ┣ 📂ALIGNMENT # bam files after bwa alignment
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┃ ┣ 📂EXPRESSION # primary analysis results
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... | ... | @@ -83,9 +83,9 @@ Lets say half of the samples belong to project "NTS-XXX_1" and the other half to |
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```sh
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📦MYPROJECT # main output folder specified with '-w' argument
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┣ 📂NTS-XXX_1 # project folder (column 4 in samplesheet)
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┃ ┣ 📂CUTADAPT # fastq files after cutadapt belonging to project 'NTS-XXX_1'
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┃ ┣ 📂FASTQ # fastq files after cutadapt belonging to project 'NTS-XXX_1'
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┣ 📂NTS-XXX_2 # project folder (column 4 in samplesheet)
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┃ ┣ 📂CUTADAPT # fastq files after cutadapt belonging to project 'NTS-XXX_2'
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┃ ┣ 📂FASTQ # fastq files after cutadapt belonging to project 'NTS-XXX_2'
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```
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