Explorer les projets

To extract information from the university of Nantes's Celcat website

Workflow designed to use biobakery tools for functional and taxonomic profiling of shotgun metagenomic data.

Get ChEBI ids present in given specie(s). Those scripts were developed during the Hackathon MoDaL Biogenouest 2021 https://biogenouest.github.io/biogen-hack-2020/M2A.html

M2 Degre project have to aim to isolate CNV share by patient from family with possibility to filter CNV on lenght, frequency from GnomAD v2.1.1 and interest genome region. Develop by Romain LAUNAY and Pierre OLCHESQUI with participation of Xavier L G

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Atac-Seq pipeline in snakemake

Snakemake pipeline to launch perform minimum generation time analysis.

Archive repository of MEDUSA code (see https://hal.archives-ouvertes.fr/hal-00839321) for details

Notebooks for the dataset workshop in Grenoble in May 2025

snakemake tutorial based on the official website https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html

Snakemake implementation of GTDBTk. Automatically uses batches of genomes.

RNAseq pipeline for gene expression quantification.

BDD2 Project Spotify Billion Playlist Analysis

Pipeline for exome sequencing with snakemake (BWA->HaplotypeCaller->VEP+GnomAD)

Pipeline for exome sequencing with snakemake (BWA->HaplotypeCaller->VEP+GnomAD)

Musclemotion repo for easy sharing and modifying

Exerciseur Python en Python. https://e19l240u.univ-nantes.io/autopython/docs/