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bioinformatics workflows using nextflow

This pipeline is specifically designed for generating dose-response curves within many batches of 'genotypes' with a special statistical computation and appropriate plots generation.

RNAseq pipeline for gene expression quantification.

Snakemake for 3' Sequencing RNA Profiling analysis. https://bio.tools/3SRP

Atac-Seq pipeline in snakemake

Scripts for single cell analysis in "Mesenchymal-derived endothelial cells promote human PSC-derived organoid development in vivo"